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Re: [stem-dev] stem-dev Digest, Vol 97, Issue 9
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Hi Emily,I gather from the question that you
are doing a computation that depends on population density, or needs area
in a related way.Chris may have another answer but you
should be able to use the s_size (additional parameter) in your pajek input
file. The following doc (created by Chris) is part of the pajek downloadable
example.If you have 1000 different nodes with
different area values you might look into creating your pajek file programmatically
using R, python, or some other language you like. It's a simple delimited
file. I agree you don't want to specify them
individually :-) Chris,Could we add a paragraph on area specification
to the wiki section on Pajek ?Best Regards,
Jamie
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Today's Topics:
1. Area labels and populated area in pajek graphs (Emily Nixon)
2. Re: Area labels and populated area in pajek graphs (Ta G)
3. Re: Area labels and populated area in pajek graphs (Emily Nixon)
----------------------------------------------------------------------
Message: 1
Date: Mon, 22 May 2017 10:26:41 +0100
From: Emily Nixon <emily.nixon@xxxxxxxxxxxxx>
To: STEM developer mailing list <stem-dev@xxxxxxxxxxx>
Subject: [stem-dev] Area labels and populated area in pajek graphs
Message-ID:
<CAFsyUbwZ3iw-ERbvcAU537a-nji_-XTX-oU=2R=TkQGKg3R+0A@xxxxxxxxxxxxxx>
Content-Type: text/plain; charset="utf-8"
Hi all,
I have successfully used the pajek file importer on a number of occasions,
but until now didn't need to specify the "Populated area" (part
of the
Population label) on my graph. I can't work out how to specify this or
how
to add area labels as well as population labels to my graph without having
to do it manually (and I have ~1000 nodes!).
There doesn't seem to be an option to specify this on the ODS spreadsheet
available https://wiki.eclipse.org/Importing_a_Pajek_Graph.
I think in the
old format it used to be s_size, but adding this to a pajek graph in the
new format doesn't work.
Any ideas would be appreciated.
Thanks very much,
Emily
--
*Emily Nixon*
*PhD Student*
Demonstrator
School of Biological Sciences
University of Bristol
Bristol Life Sciences Building
24 Tyndall Avenue
Bristol
BS8 1TQ
Tel +44 (0)117 394 1389
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Message: 2
Date: Mon, 22 May 2017 11:42:21 +0200
From: Ta G <taras1802@xxxxxxxxxxxxxx>
To: "emily.nixon@xxxxxxxxxxxxx" <emily.nixon@xxxxxxxxxxxxx>,
STEM
developer mailing list <stem-dev@xxxxxxxxxxx>
Subject: Re: [stem-dev] Area labels and populated area in pajek graphs
Message-ID: <5922b279.c7571c0a.e1857.3474@xxxxxxxxxxxxx>
Content-Type: text/plain; charset="utf-8"
Hi Emily,
it is possible to define labels in the XML file of your graph.
You find this under the file-path:
C:\stem\workspace\YOUR_PROJECT\graphs
The file Looks like this:
test.graph
So I think this can help you.
Please open the files with an texteditor like Notepad ++.
I used this way to hack a modfier and add 6000 Parameter-values into
the modifier file.
I used KNIME for that and saved the file into the directory of my
Project.
So maybe you can use a similiar way.
Best regards,
Taras
Von: Emily Nixon
Gesendet: Montag, 22. Mai 2017 11:26
An: STEM developer mailing list
Betreff: [stem-dev] Area labels and populated area in pajek graphs
Hi all,
I have successfully used the pajek file importer on a number of occasions,
but until now didn't need to specify the "Populated area" (part
of the Population label) on my graph. I can't work out how to specify this
or how to add area labels as well as population labels to my graph without
having to do it manually (and I have ~1000 nodes!).
There doesn't seem to be an option to specify this on the ODS spreadsheet
available https://wiki.eclipse.org/Importing_a_Pajek_Graph.
I think in the old format it used to be s_size, but adding this to a pajek
graph in the new format doesn't work. ?
Any ideas would be appreciated.
Thanks very much,
Emily?
--
Emily Nixon
PhD Student
Demonstrator?
School of Biological Sciences
University of Bristol
Bristol Life Sciences Building
24 Tyndall Avenue
Bristol
BS8 1TQ
Tel +44 (0)117 394 1389
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Message: 3
Date: Mon, 22 May 2017 10:59:01 +0100
From: Emily Nixon <emily.nixon@xxxxxxxxxxxxx>
To: Ta G <taras1802@xxxxxxxxxxxxxx>
Cc: STEM developer mailing list <stem-dev@xxxxxxxxxxx>
Subject: Re: [stem-dev] Area labels and populated area in pajek graphs
Message-ID:
<CAFsyUbwQtr5XNLVqu-rVF5dfPLe8tzsKS2d3TNG9rv95ubF2fw@xxxxxxxxxxxxxx>
Content-Type: text/plain; charset="utf-8"
Hi Taras,
Thanks, I've managed to open this and I can see that nothing is written
next to:
</label>
</value>
</edges>
for each node (or maybe edge, I'm not sure which, see attached photo)
but I've never written in XML before so I'm not sure how to define an area
label using XML language, or how to do this quickly for each of the 1000
nodes! Is there a document or website that could help? Or some basic rules
you know I need to follow?
Best wishes,
Emily
On 22 May 2017 at 10:42, Ta G <taras1802@xxxxxxxxxxxxxx> wrote:
> Hi Emily,
>
> it is possible to define labels in the XML file of your graph.
>
>
>
> You find this under the file-path:
>
>
>
> C:\stem\workspace\YOUR_PROJECT\graphs
>
>
>
> The file Looks like this:
>
>
>
> test.graph
>
>
>
> So I think this can help you.
>
> Please open the files with an texteditor like Notepad ++.
>
> I used this way to hack a modfier and add 6000 Parameter-values
into the
> modifier file.
>
> I used KNIME for that and saved the file into the directory of my
Project.
>
>
>
> So maybe you can use a similiar way.
>
>
>
> Best regards,
>
> Taras
>
>
>
>
>
> *Von: *Emily Nixon <emily.nixon@xxxxxxxxxxxxx>
> *Gesendet: *Montag, 22. Mai 2017 11:26
> *An: *STEM developer mailing list <stem-dev@xxxxxxxxxxx>
> *Betreff: *[stem-dev] Area labels and populated area in pajek graphs
>
>
>
> Hi all,
>
>
>
> I have successfully used the pajek file importer on a number of occasions,
> but until now didn't need to specify the "Populated area"
(part of the
> Population label) on my graph. I can't work out how to specify this
or how
> to add area labels as well as population labels to my graph without
having
> to do it manually (and I have ~1000 nodes!).
>
>
>
> There doesn't seem to be an option to specify this on the ODS spreadsheet
> available https://wiki.eclipse.org/Importing_a_Pajek_Graph.
I think in
> the old format it used to be s_size, but adding this to a pajek graph
in
> the new format doesn't work.
>
>
>
> Any ideas would be appreciated.
>
>
>
> Thanks very much,
>
>
>
> Emily
>
> --
>
> *Emily Nixon*
>
> *PhD Student*
>
> Demonstrator
>
>
>
> School of Biological Sciences
>
> University of Bristol
> Bristol Life Sciences Building
> 24 Tyndall Avenue
> Bristol
> BS8 1TQ
>
> Tel +44 (0)117 394 1389 <+44%20117%20394%201389>
>
>
>
--
*Emily Nixon*
*PhD Student*
Demonstrator
School of Biological Sciences
University of Bristol
Bristol Life Sciences Building
24 Tyndall Avenue
Bristol
BS8 1TQ
Tel +44 (0)117 394 1389
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