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[cdt-dev] All messages not shown in 'Problems' view

I see this behaviour and wanted to clarify whether it is expected.
In a Standard Make C project containing fileX, the makefile does the following:
1. compile fileX (This generates 2 warnings)
2. cp fileX fileY && compile fileY with different flags (generates 2 warnings)
3. cp fileX fileZ && compile fileZ  with different flags (generates 2 warnings)
The warnings from step1 are shown in the 'Problems' view.
However, warnings from step2 & step3  DO NOT appear in the 'Problems' view.
Is this expected?
Are the renamed files (fileY and fileZ) considered to be part of the of the project?

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