Skip to main content

[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index] [List Home]
Re: [stem-dev] stem-dev Digest, Vol 135, Issue 6

Thanks.

How are the files uploaded to STEM (e.g. the indicence csv) ? And what about formatting the files?

In the website you sent me you mention that:

"2. Reference data folder. This is the directory containing the reference data. The directory must contain the same files that STEM generates in its log output folders, e.g. an I_2.csv, Incidence_2.csv, S_2.csv etc. The current error function only requires the Incidence file. If the reference files are located in a folder inside the current project, the location is specified in a platform neutral manner and the project and associated automatic experiment can be shared with others."

How are the incidence files generated, forated and uploaded?

Sorry for all the questions...

thanks,
Frederico

James Kaufman <jhkauf@xxxxxxxxxx> escreveu no dia segunda, 13/07/2020 à(s) 17:08:
Frederico,

STEM provides a Nelder-Meade simplex algorithm which does precisely that.
https://wiki.eclipse.org/Running_an_Automated_Experiment


There is also and example here....
https://wiki.eclipse.org/2019_novel_Corona_Virus_Model#.28new.29_Advanced_SACIR.28S.29_model_capturing_Asymptomatic_Transmission



From:        stem-dev-request@xxxxxxxxxxx
To:        stem-dev@xxxxxxxxxxx
Date:        07/13/2020 09:00 AM
Subject:        [EXTERNAL] stem-dev Digest, Vol 135, Issue 6
Sent by:        stem-dev-bounces@xxxxxxxxxxx




Send stem-dev mailing list submissions to
                stem-dev@xxxxxxxxxxx

To subscribe or unsubscribe via the World Wide Web, visit
               
https://www.eclipse.org/mailman/listinfo/stem-dev
or, via email, send a message with subject or body 'help' to
                stem-dev-request@xxxxxxxxxxx

You can reach the person managing the list at
                stem-dev-owner@xxxxxxxxxxx

When replying, please edit your Subject line so it is more specific
than "Re: Contents of stem-dev digest..."


Today's Topics:

  1. Parameter estimation (Frederico Mestre)


----------------------------------------------------------------------

Message: 1
Date: Mon, 13 Jul 2020 11:20:02 +0100
From: Frederico Mestre <fmestre@xxxxxxxxx>
To: STEM developer mailing list <stem-dev@xxxxxxxxxxx>
Subject: [stem-dev] Parameter estimation
Message-ID:
                <CAASDe-6=+Z1WO7=7-NNL687RY8eW082mhOjHMU-SqMDUvimEow@xxxxxxxxxxxxxx>
Content-Type: text/plain; charset="utf-8"

Hello,

Quick question: STEM does not provide a method to estimate the parameters
of the compartmental model based upon disease incidence data, does it?

Cheers,

--
Frederico Mestre

Mediterranean Institute for Agriculture, Environment and Development
The 'Rui Nabeiro' Biodiversity Chair
Universidade de ?vora | Rua Dr. Joaquim Henrique da Fonseca 7000 ? 890
?vora, Portugal
*E-mail:* mestre.frederico@xxxxxxxxx | fmestre@xxxxxxxxx *Web:*
www.med.uevora.pt
*ResearchGate*:
https://www.researchgate.net/profile/Frederico_Mestre
*Website*:
https://geekcologist.wordpress.com
?
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <
https://www.eclipse.org/mailman/private/stem-dev/attachments/20200713/40a736f9/attachment.html>

------------------------------

_______________________________________________
stem-dev mailing list
stem-dev@xxxxxxxxxxx
To change your delivery options, retrieve your password, or unsubscribe from this list, visit
https://www.eclipse.org/mailman/listinfo/stem-dev

End of stem-dev Digest, Vol 135, Issue 6
****************************************




_______________________________________________
stem-dev mailing list
stem-dev@xxxxxxxxxxx
To unsubscribe from this list, visit https://www.eclipse.org/mailman/listinfo/stem-dev


--
Frederico Mestre

Mediterranean Institute for Agriculture, Environment and Development
The 'Rui Nabeiro' Biodiversity Chair
Universidade de Évora | Rua Dr. Joaquim Henrique da Fonseca 7000 – 890 Évora, Portugal

Back to the top