just one small suggestion: It would be cool if one could select multiple repositories in EGit's repositories view and choose "pull all". This is not possible in version 2.0, but it would save some clicks
You can do this already in Explorer views, for example, the Package Explorer in a Java project. Strangely, multi fetch is not. Surely if egit/jgit can perform fetch+merge on multiple repos, it should be trivially easy to perform the fetch without the merge?