Getting out the known commands gives:
jgit --git-dir GIT_DIR --help (-h) --show-stack-trace command [ARG ...]
The most commonly used commands are:
branch List, create, or delete branches
clone Clone a repository into a new directory
commit Record changes to the repository
daemon Export repositories over git://
diff Show diffs
fetch Update remote refs from another repository
init Create an empty git repository
log View commit history
push Update remote repository from local refs
rm Stop tracking a file
tag Create a tag
version Display the version of jgit
There isn't an "add" command? How do you add files to be commited?